You would re encode it exactly the way you did the first one. The smooshed one.
Open your file in TMPGenc, select a template with the size you want,
(not smooshed),
Delete anything in the audio line.
Name the new reencoded file and where you want to put it.
Let it encode. [Start]
After many hours you will have your re-encoded video file.
For the audio, do the same as you did before.
Rip wav file with Virtual dub.
Convert wav file with Headac3he to mp2
Join the mp2 and the m1v files back together in bbmpg or Tmpgenc>Mpeg tools>Simple Multiplex. (make sure you select non compliant)
Run
Burn the end result.
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